##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane4_Index7_1.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	21762435	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.222325075296034	33.0	31.0	34.0	31.0	34.0
2	32.45505725806878	34.0	31.0	34.0	31.0	34.0
3	32.4656666407045	34.0	31.0	34.0	31.0	34.0
4	36.10445545271014	37.0	35.0	37.0	35.0	37.0
5	35.99513864142501	37.0	35.0	37.0	35.0	37.0
6	35.97307056861973	37.0	35.0	37.0	35.0	37.0
7	35.961379183901066	37.0	35.0	37.0	35.0	37.0
8	35.92519233256756	37.0	35.0	37.0	35.0	37.0
9	37.629026485317475	39.0	37.0	39.0	35.0	39.0
10-14	37.87157589672295	39.2	37.2	39.4	35.0	39.4
15-19	38.82912486585256	40.0	38.0	41.0	35.0	41.0
20-24	38.649752079673064	40.0	38.0	41.0	34.0	41.0
25-29	38.32041459514985	40.0	38.0	41.0	33.8	41.0
30-34	38.2855098981341	40.0	38.0	41.0	33.6	41.0
35-39	38.00501998972082	40.0	37.4	41.0	33.0	41.0
40-44	37.91182333226958	40.0	37.0	41.0	33.0	41.0
45-49	37.55726446971582	39.6	36.2	41.0	32.2	41.0
50-54	36.96202866085527	39.0	35.0	40.6	31.0	41.0
55-59	36.28206696539243	38.0	34.8	40.0	30.4	41.0
60-64	35.46572393208756	36.6	34.0	39.8	29.2	41.0
65-69	34.54477662081472	35.4	33.4	38.8	28.2	40.6
70-74	33.4727257312888	35.0	32.6	37.4	26.4	39.6
75-79	32.42671063233503	34.6	31.6	36.0	26.0	38.8
80-84	31.804526083593128	34.4	31.6	35.0	25.0	36.8
85-89	30.58251600981232	34.0	31.0	35.0	20.4	36.0
90	29.548456595045547	34.0	30.0	35.0	2.0	35.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
10	1.0
11	16.0
12	119.0
13	940.0
14	4425.0
15	11797.0
16	20584.0
17	29098.0
18	37454.0
19	45502.0
20	55285.0
21	65046.0
22	75839.0
23	89308.0
24	109107.0
25	135741.0
26	173534.0
27	222862.0
28	285555.0
29	364660.0
30	458831.0
31	576725.0
32	730572.0
33	944244.0
34	1285891.0
35	1863097.0
36	2895889.0
37	4248187.0
38	4693691.0
39	2306753.0
40	31682.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	23.94250107667094	12.549449070380492	10.223609685932464	53.2844401670161
2	21.418935072291063	19.118903257603343	36.397823360440185	23.064338309665413
3	25.57181675671863	21.66332030400091	22.705400383734634	30.059462555545828
4	27.7877084986124	27.57982275420926	19.43479670358579	25.19767204359255
5	29.410394832782444	29.771416130589838	21.58182441775339	19.236364618874326
6	24.3172053127327	32.72163707783619	21.964237917310264	20.996919692120848
7	21.613266162541095	18.749574668459665	37.53799149773451	22.099167671264727
8	21.548328576282938	22.101382496949444	29.402504820807046	26.947784105960572
9	21.543489963324415	21.02248668404983	31.837103706455643	25.596919646170107
10-14	24.670614294769862	26.186145989637648	24.624636902993622	24.518602812598868
15-19	25.05707104926448	25.13616789665311	25.021252447164116	24.785508606918295
20-24	24.83880365113194	25.372640981997485	25.386451936769976	24.402103430100603
25-29	24.699559675542737	25.373367609485083	25.349601657462863	24.57747105750932
30-34	24.777297249269246	25.2987562223667	25.256110437941505	24.667836090422554
35-39	24.78702716755707	25.452430589123182	25.207758607957658	24.55278363536209
40-44	24.731810086641623	25.278313165957687	25.384013157305823	24.605863590094863
45-49	24.67213884937742	25.342043738911123	25.297598161395427	24.688219250316028
50-54	24.710960235796968	25.4177369758045	25.328846559926845	24.542456228471686
55-59	24.721563367389678	25.3577619038293	25.286589866387416	24.634084862393603
60-64	24.645818770201615	25.361307731035687	25.398884413296415	24.593989085466283
65-69	24.665489898137256	25.47927064368111	25.3792937201567	24.475945738024933
70-74	24.72896441289433	25.413302066048043	25.286747901611946	24.570985619445686
75-79	24.700671376411616	25.37445475790855	25.353436277140517	24.571437588539315
80-84	24.628814221749003	25.52567269026193	25.367547835001936	24.477965252987133
85-89	24.72328917178285	25.51288678377968	25.263530205324546	24.500293839112917
90	24.463910077853647	25.600853850871292	25.472428827456746	24.462807243818315
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	77.22694124368704
2	44.48327338195647
3	55.63127931226446
4	52.98538054220495
5	48.64675945165678
6	45.314125004853544
7	43.71243383380582
8	48.496112682243506
9	47.140409609494526
10-14	49.189217107368734
15-19	49.84257965618277
20-24	49.240907081232535
25-29	49.27703073305206
30-34	49.4451333396918
35-39	49.33981080291916
40-44	49.337673676736486
45-49	49.36035809969345
50-54	49.25341646426865
55-59	49.355648229783284
60-64	49.2398078556679
65-69	49.14143563616219
70-74	49.299950032340014
75-79	49.27210896495093
80-84	49.106779474736136
85-89	49.223583010895766
90	48.926717321671966
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	4.0
1	4.0
2	2.0
3	3.0
4	5.0
5	5.0
6	8.0
7	12.5
8	24.5
9	41.5
10	49.0
11	70.0
12	109.5
13	181.5
14	330.5
15	574.5
16	1035.0
17	1795.0
18	3106.5
19	5526.0
20	7082.0
21	9694.0
22	16558.5
23	26789.5
24	40862.5
25	60212.5
26	85952.0
27	118307.5
28	154266.5
29	193101.5
30	213849.0
31	234836.5
32	278592.0
33	327670.0
34	380534.5
35	431162.0
36	483628.0
37	542962.5
38	594752.0
39	636935.0
40	658270.0
41	672945.0
42	702347.5
43	728729.5
44	745123.0
45	753861.0
46	754194.0
47	749386.5
48	750582.5
49	752849.5
50	752779.0
51	744186.5
52	734542.5
53	722726.5
54	715849.0
55	716470.5
56	705482.5
57	689899.0
58	667720.0
59	638774.0
60	624146.0
61	606607.5
62	569758.0
63	523495.0
64	469048.5
65	415944.0
66	360762.0
67	303468.0
68	252021.5
69	202814.5
70	177332.0
71	155927.0
72	116432.0
73	83622.0
74	55914.5
75	33961.0
76	19376.0
77	10135.5
78	4630.5
79	1891.5
80	1036.0
81	729.0
82	288.0
83	121.0
84	67.5
85	39.0
86	25.5
87	14.0
88	7.0
89	5.5
90	5.0
91	3.0
92	1.5
93	1.5
94	1.0
95	0.5
96	0.0
97	0.0
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.17490230298218007
2	0.052728474547999796
3	0.0
4	0.0
5	3.216551824278855E-5
6	0.0
7	0.0
8	0.0
9	0.0
10-14	0.0
15-19	0.0
20-24	1.8380296138736312E-6
25-29	9.640465324767197E-4
30-34	0.001736018970303645
35-39	0.0037201719384802297
40-44	0.003007935463104198
45-49	0.0024804209639224654
50-54	0.013021520799487742
55-59	0.002378410320352479
60-64	1.286620729711542E-5
65-69	5.973596245089302E-5
70-74	0.005329366865426594
75-79	0.002912357923182769
80-84	6.359582464002764E-4
85-89	8.537647556443017E-4
90	0.0014750187651335891
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.1762435E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	55.831042503700566
#Duplication Level	Relative count
1	100.0
2	33.102660355802186
3	17.316794516076385
4	10.91997170991785
5	7.476198248191067
6	5.647135629182308
7	4.341439529949405
8	3.3991621783363257
9	2.9204069419509278
10++	32.4922474294108
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
GAAGA	4711695	2.5928192	5.111257	2
CCAGG	4547070	2.568162	5.489817	1
CCTGG	4562065	2.5634394	6.0668454	1
CTTCT	4790100	2.5578666	5.9856954	1
AAGAA	4703095	2.535969	5.0793095	2
CTGGA	4436155	2.4604836	9.284813	1
CTGCT	4324420	2.3687832	5.2643657	1
TCCAG	4293430	2.3639104	5.5341673	2
CTCCT	4246425	2.3090527	7.4539185	1
CTGGG	4017815	2.2742522	8.872868	1
CAGGA	4008085	2.2344975	5.598835	1
CTTCA	4142970	2.2236903	6.104163	1
CTCCA	3999800	2.1861393	7.9176617	1
CCCAG	3861480	2.1649978	7.275337	1
CAGAA	3872870	2.1156359	5.2584424	1
CTCTG	3718290	2.0367641	6.7005525	1
CTGGC	3354460	1.8848822	5.524185	1
CTGAA	3437595	1.8682439	6.032749	1
TGGAA	3411865	1.8679178	5.2544265	2
CTTTT	3475005	1.8222659	5.357438	1
CTCAG	3166170	1.7432549	6.4766426	1
CTGAG	3135365	1.7390091	5.17674	1
CTTTG	3187840	1.7148138	5.4590516	1
CTGGT	3040915	1.6779879	5.354029	1
CTTGG	2978385	1.6434838	5.621791	1
CTCCC	2790320	1.545046	5.011553	1
>>END_MODULE
